YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13625941, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	146	0.78
Transmembrane Helix	147	163	0.74
Non-Cytoplasmic	164	178	0.71
Transmembrane Helix	179	199	0.84
Cytoplasmic	200	204	0.67
Transmembrane Helix	205	227	0.82
Non-Cytoplasmic	228	255	0.92
Transmembrane Helix	256	278	0.87
Cytoplasmic	279	284	0.90
Transmembrane Helix	285	306	0.95
Non-Cytoplasmic	307	339	0.91
Transmembrane Helix	340	361	0.87
Cytoplasmic	362	378	0.83
Transmembrane Helix	379	400	0.84
Non-Cytoplasmic	401	412	0.67
Transmembrane Helix	413	432	0.91
Cytoplasmic	433	440	0.64
Transmembrane Helix	441	460	0.87
Non-Cytoplasmic	461	475	0.68
Transmembrane Helix	476	499	0.86
Cytoplasmic	500	658	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRTVSDGG DDNGTDVASR TSSHRRTEHG HGYKVGVPPE KNLLAEISDA VKETFFADDP  60
   61 LRQYKDQPRS KKIWLGLQHI FPVLDWSRHY SLGKFKGDFI AGLTIASLCI PQDIGYSKLA 120
  121 NLPAEVGLYS SFVPPLIYAV MGSSRDIAIG PVAVVSLLLG TLLQNEIDPK THPLEYRRLA 180
  181 FTATFFAGVT QAALGFFRLG FIIEFLSHAA IVGFMAGAAI TIALQQLKGF LGIANFTKKS 240
  241 DIVSVMKSVW GNVHHGWNWQ TILIGATFLA FLLVAKYIGK RNKKLFWVSA IAPLTSVIIS 300
  301 TFFVYITRAD KHGVAIVKNI RKGINPPSAS LIYFTGPYLA TGFKIGIVAG MIGLTEAIAI 360
  361 GRTFAALKDY RIDGNKEMMA LGTMNIVGSL TSCYVATGSF SRSAVNYMAG CKTAVSNVVM 420
  421 SIVVMLTLLL ITPLFKYTPN AILSSIIISA VLGLIDYESA YLIWKVDKLD FLACMGAFFG 480
  481 VIFSSVEYGL LIAVAISLAK ILLQVTRPRT VLLGNLPQTT IYRNVEQYPD ATKVPGVLIV 540
  541 RVDSAIYFTN SNYVKERILR WLRDEEEQQQ DQKLTKTEFL IVDLSPVIDI DTSGIHALEE 600
  601 LAKALEKRKI QLVLTNPGPA VIQKLRSAKF TDMIGEDNIF LTVGDAVKKF APKMVDNV