YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|37935812
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAAMVSSAGG LLAMLNEPHP SLKLHALSYL IRLVDQFWPE ISTSVPIIES LYEDEEFDQH  60
   61 QRQLAALLAS KVFYYLGELN DSLSYALGAG SLFDVSEDSD YIHTLLSKAI DEYAILRSKA 120
  121 VESSEVVEID PRLVAIVERM LDKCITDGKY QQAMGIAIEC RRLDKLEEAI IKSENVQGTL 180
  181 SYCINVSHSF VNQREYRHEV LRLLVNVYQK LASPDYLSIC QCLMFLDEPQ GVASILEKLL 240
  241 RSENKDDALL AFQISFDLVQ NEHQAFLMSV RDRLPAPKTR PVEAIQAVET STAQNENTAG 300
  301 DVQMADETPS QTIVHETDPV DAVYAERLTK AKGILSGETS IQLTLQFLYS HNKSDLLILK 360
  361 TIKQSVEMRN SVCHSATIYA NAIMHAGTTV DTFLRENLDW LSRATNWAKF SATAGLGVIH 420
  421 RGHLQQGRSL MAPYLPQGGA GGGGSPYSEG GALYALGLIH ANHGEGIKQF LRDSLRSTSV 480
  481 EVIQHGACLG LGLAALGTAD EDIYDDIKSV LYTDSAVAGE AAGISMGLLL VGTATDKASE 540
  541 MLAYAHETQH EKIIRGLALG IALTVYGREE GADTLIEQMT RDQDPIIRYG GMYALALAYS 600
  601 GTANNKAIRQ LLHFAVSDVS DDVRRTAVLA LGFVLYSDPE QTPRIVSLLS ESYNPHVRYG 660
  661 AALAVGISCA GTGLSEAISL LEPLTSDVVD FVRQGALIAM AMVMVQISEA SDSRVGAFRR 720
  721 QLEKIILDKH EDTMSKMGAI LASGILDAGG RNVTIRLLSK TKHDKVTAVI GLTVFSQFWY 780
  781 WYPLIYFISL AFSPTAFIGL NYDLKVPKFE FMSHAKPSLF EYPKPTTVAT ANTAAKLPTA 840
  841 VLSTSAKAKA KAKKEAEQKA KAENSGNEAG KANAASDEKE AESMQVDSTA TTVEKKVEPE 900
  901 ATFEILVNPA RVVPSQEKYI KLMEDSRYVP MKLAPSGFVL LRDLRPHEPE VLSLTDAPTS 960
  961 TASPAVGAEA AGQAQQAATT SAMAIDDEPQ PPQAF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle