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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PSD2B_ARATH
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVPDPNSV GGGAKRDEAT TKIPSKDSKK KDDKKEEDLS EEDLQLKQNL ELYVERVQDP  60
   61 NPELQKIALE SMRKEIRDST SSMTSVPKPL KFLRPHYGVL KEFHAKMAES DLKKMLADIL 120
  121 SVLALTMSAE GERESLNYRL NGSESDIGSW GHEYVRNLAG EIAKEYTIRQ GEESSIEDLM 180
  181 DLVQQIVSFH MKHNAETEAV DLLMDVEDLD LLLEHVDNTN FRRTCNYLTS AAKYLPGPDD 240
  241 MLVLDIAYMI YIKFAEYPNA LQIALFLDNM QYVKQVFTSC TDLVKKKQFC YMIARHGMTF 300
  301 ELDQEMVAND EDKEALQDIV NNSKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG 360
  361 PSVDSARQNL SATFVNAFVN AGFGQDKLMT VPSDSTSGSA GNWLFKNKEH GKTSAVASLG 420
  421 MIQLWDVETG LGHLDKYFHS NDNPVVAGAL LGVGIVNCGI KNDCDPAFAL LSGYIDNEDS 480
  481 SVRIGAIMGL GIAYAGSQND QIKIRLSPIL NDANAPLDVI AFAALSLGMI YVGSCNEEVA 540
  541 QSIIFALMDR SEAELGEALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL 600
  601 LSCAYAGTGN VLKVQDLLAQ CGEHLVKGDI HQGPAVIGLA MVAMSEELGL DMEIRSLERV 660
  661 LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD SEVAMAAIIS LGLIGAGTNN 720
  721 ARIAGMLRNL SSYYYKDASL LFCVRIAQGF VHMGKGLLTL NPFHSERLLL SPTALAGIVT 780
  781 LLHACLDMKS IILGKYHYVL YFLVLAMQPR MMLTVDQSLK PISVPVRVGQ AVDVVGQAGR 840
  841 PKTITGFQTH STPVLLAAGE RAELATEKYI PLSPILEGFV ILKENPDYRE E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle