YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39979135
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRADIPMGTR EETPLRFLLT ALVSLLLFGL FVWPGDSGSF SWLGSGSEDF QLETVRYYDL  60
   61 SNVQGTAKGW EREERILICV PLRDAEVHMP MFFGHLLNLT YPHHLIDLAF LVSDSKDNTL 120
  121 AVLERELTAI QASTDPSKHF GEISIIEKDF GQKVNQDVES RHGFAAQASR RKLMAQARNW 180
  181 LLSAALRPYH SWVYWRDVDV ETAPTTILED LMRHNKDVIV PNVWRPLPDW LGGEQPYDLN 240
  241 SWAESETALA LADTLDEDAV IVEGYAEYAT WRPHLAYLRD PYGDPDMEME IDGVGGVSIL 300
  301 AKAKVFRYGV HFPAFSFEKH AETEAFGKMS RRMGFSVVGL PHYTIWHLYE PSVDDIKHME 360
  361 VPNSRQQMEQ ERLAREKEEK EKAMKEQKMK ESFGDATGQW EKDKNEIQNL AMQENKKAEE 420
  421 QPAAGQQGGP ADGPANAAPK EEKKEGTQ

Type	Start	End	Confidence
Cytoplasmic	1	14	0.84
Transmembrane Helix	15	35	0.81
Non-Cytoplasmic	36	448	0.99