YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47177022\|ref\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDITNMRHE GVLETESHEL VGGSRQTSVY VYEAPVRLWH WINAIAILVL ALTGFFIGRP  60
   61 LPTMPGEASA NFLMGYIRFT HFTAGYILAI GFLFRFYWSL VGNHHAKQLF RLPLTSRHWW 120
  121 SEIWFELRWY LFIEKRPKKY AGHNPLAQIA MFLFITIGTM FMILTGFALY AEGSQRGSWQ 180
  181 DTLFGWVIPL VGQSFDVHTL HRLGMWWILT FVIIHIYVAI REDIMSRQSI VSTMISGHRT 240
  241 FKDDDPS

Type	Start	End	Confidence
Cytoplasmic	1	37	0.89
Transmembrane Helix	38	58	0.92
Non-Cytoplasmic	59	78	0.78
Transmembrane Helix	79	98	0.94
Cytoplasmic	99	145	0.87
Transmembrane Helix	146	170	0.88
Non-Cytoplasmic	171	198	0.89
Transmembrane Helix	199	220	0.86
Cytoplasmic	221	247	0.93