YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33520458, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGDGKGHN SGAHDSGGSI NGTSGKGGPD SGGGYWDNHP HITITGGREV GQGGAGINWG  60
   61 GGSGHGNGGG SVAIQEYNTS KYPNTGGFPP LGDASWLLNP PKWSVIEVKS ENSAWRSYIT 120
  121 HVQGHVYKLT FDGTGKLIDT AYVNYEPSDD TRWSPLKSFK YNKGTAEKQV RDAINNEKEA 180
  181 VKDAVKFTAD FYKEVFKVYG EKAEKLAKLL ADQAKGKKVR NVEDALKSYE KYKTNINKKI 240
  241 NAKDREAIAK ALESMDVGKA AKNIAKFSKG LGWVGPAIDI TDWFTELYKA VETDNWRSFY 300
  301 VKTETIAVGL AATHVAALAF SAVLGGPVGI LGYGLIMAGV GALVNETIVD EANKVIGL

Type	Start	End	Confidence
Cytoplasmic	1	305	0.72
Transmembrane Helix	306	337	0.68
Non-Cytoplasmic	338	358	0.50