YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZNT9_PONAB
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPGLAAAAA AHRCSWSSLC RLRPRCRAAA CNPSDCQEWQ NLVTFGSFSN MVPCSHPYIG  60
   61 TLSQVKLYST DVQKEGQGSQ TLRVEKVPSF ETAEGIGAEL KAPLKQEPLQ VRVKAVLKKR 120
  121 EYGSKYTQNN FITGVRAINE FCLKSSDLEQ LRKIRRRSPH EDTESFTVYL RSDVEAKSLE 180
  181 VWGSPEALAR EKKLRKEAEI EYRERLFRNQ KILREYRDFL GNTKPRSRTA SVFFKGPGKV 240
  241 VMVAICINGL NCFFKFLAWI YTGSASMFSE AIHSLSDTCN QGLLALGISK SVQTPDPSHP 300
  301 YGFSNMRYIS SLISGVGIFM MGAGLSWYHG VMGLLHPQPI ESLLWAYCIL AGSLVSEGAT 360
  361 LLVAVNELRR NARAKGMSFY KYVMESRDPS TNVILLEDTA AVLGVIIAAT CMGLTSITGN 420
  421 PLYDSLGSLG VGTLLGMVSA FLIYTNTEAL LGRSIQPEQV QRLTELLEND PSVRAIHDVK 480
  481 ATDLGLGKVR FKAEVDFDGR VVTRSYLEKQ DFDQMLQEIQ EVKTPEELET FMLKHGENII 540
  541 DTLGAEVDRL EKELKKRNPE VRHVDLEIL

Type	Start	End	Confidence
Signal Peptide	1	17	0.84
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	237	0.90
Transmembrane Helix	238	259	0.85
Cytoplasmic	260	307	0.92
Transmembrane Helix	308	331	0.87
Non-Cytoplasmic	332	342	0.92
Transmembrane Helix	343	365	0.94
Cytoplasmic	366	393	0.94
Transmembrane Helix	394	417	0.84
Non-Cytoplasmic	418	425	0.74
Transmembrane Helix	426	445	0.94
Cytoplasmic	446	569	0.96