YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55732956
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRRRKMEPST AARAWALFWL LPPLLGAVCA SGPRTLVLLD NLNVRETHSL FFRSLKDRGF  60
   61 ELTFKTADDP SLSLIKYGEF LYDNLIIFSP SVEDFGGNIN VETISAFIDG GGSVLVAASS 120
  121 DIGDPLRELG SECGIEFDEE KTAVIDHHNY DISDLGQHTL IVADTENLLK APTIVGKSSL 180
  181 NPILFRGVGM VADPDNPLVL DILTGSSTSY SFFPDKPITQ YPHAVGKNTL LIAGLQARNN 240
  241 ARVIFSGSLD FFSDSFFNSA VQKAAPGSQR YSQTGNYELA VALSRWVFKE EGVLRVGPVS 300
  301 HHRVGETAPP NAYTVTDLVE YSIVIQQLSN GKWVPFDGDD IQLEFVRIDP FVRTFLKKKG 360
  361 GKYSVQFKLP DVYGVFQFKV DYNRLGYTHL YSSTQVSVRP LQHTQYERFI PSAYPYYASA 420
  421 FSMMLGLFIF SIVFLHMKEK EKSD

Type	Start	End	Confidence
Cytoplasmic	1	14	0.86
Transmembrane Helix	15	37	0.83
Non-Cytoplasmic	38	412	0.99
Transmembrane Helix	413	435	0.92
Cytoplasmic	436	444	0.90