YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55732044\|emb\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGETKSPGPK KCGPYISSVT SQSVNLMIRG VVLFFIGVFL ALVLNLLQIQ RNVTLFPPDV  60
   61 IASIFSSAWW VPPCCGTASA VIGLLYPCID RHLGEPHKFK REWSSVMRCV AVFVGINHAS 120
  121 AKVDFDNNIQ LSLTLAALSI GLWWTFDRSR SGFGLGVGIA FLATVVTQLL VYNGVYQYTS 180
  181 PDFLYVRSWL PCIFFAGGIT MGNIGRQLAM YECKVIAENL IRNEEGKKYL LYRKTR

Type	Start	End	Confidence
Cytoplasmic	1	25	0.97
Transmembrane Helix	26	49	0.87
Non-Cytoplasmic	50	67	0.89
Transmembrane Helix	68	89	0.92
Cytoplasmic	90	103	0.92
Transmembrane Helix	104	121	0.91
Non-Cytoplasmic	122	128	0.79
Transmembrane Helix	129	146	0.93
Cytoplasmic	147	152	0.87
Transmembrane Helix	153	172	0.95
Non-Cytoplasmic	173	184	0.78
Transmembrane Helix	185	205	0.90
Cytoplasmic	206	236	0.95