YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|197097750
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAWPGSSTM FLLLPFDSLI VNLLGISLTV LFTLLLVFII VPAIFGVSFG IRKLYMKTLL  60
   61 KIFAWATLRM ERGAKEKNHQ LYKPYTNGII AKDPTSLEEE IKEIRRSGSS KALDNTPEFE 120
  121 LSDIFYFCRK GMETIMDDEV TKRFSAEELE SWNLLSRTNY NFQYISLRLT VLWGLGVLIR 180
  181 YCFLLPLRIA LAFTGISLLV VGTTVVGYLP NGRFKEFMSK HVHLMCYRIC VRALTAIITY 240
  241 HDRENRPRNG GICVANHTSP IDVIILASDG YYAMVGQVHG GLMGVIQRAM VKACPHVWFE 300
  301 RSEVKDRHLV AKRLTEHVQD KSKLPILIFP EGTCINNTSV MMFKKGSFEI GATVYPVAIK 360
  361 YDPQFGDAFW NSSKYGMVTY LLRMMTSWAI VCSVWYLPPM TREADEDAVQ FANRVKSAIA 420
  421 RQGGLVDLLW DGGLKREKVK DTFKEEQQKL YSKMIVGNHK DRSRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.55
Transmembrane Helix	19	51	0.85
Cytoplasmic	52	163	0.95
Transmembrane Helix	164	184	0.87
Non-Cytoplasmic	185	188	0.80
Transmembrane Helix	189	210	0.92
Cytoplasmic	211	378	0.73
Transmembrane Helix	379	397	0.49
Non-Cytoplasmic	398	465	0.54