YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55730565
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METPAWPRVP RPETAVAWTL LLGWVFAQVA GASGTTNTVA AYNLTWKSTN FKTILEWEPK  60
   61 PLNQVYTVQI STKTGDWKSK CFYTADTECD LTDEIVKDVK QTYLARVFSY PAGNVGSTGS 120
  121 AGEPLYENSP EFTPYLETNL GQPTIQSFEQ VGTKVNVTVQ DERTLVRRNN TFLSLRDVFG 180
  181 KDLIYTLYYW KSSSSGKKTA KTNTNEFLID VDKGENYCFS VQAVIPSRTA NRKSTDSPVE 240
  241 CMGHKKGEFR EIFYIIGAVV FAVIILVIIL AISLHKCRKA GVGQSWKENS PLNVA

Type	Start	End	Confidence
Signal Peptide	1	31	0.89
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	251	0.96
Transmembrane Helix	252	274	0.92
Cytoplasmic	275	295	0.93