YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GP155_PONAB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.51
Transmembrane Helix	44	67	0.77
Non-Cytoplasmic	68	103	0.44
Transmembrane Helix	104	127	0.89
Cytoplasmic	128	135	0.72
Transmembrane Helix	136	156	0.70
Non-Cytoplasmic	157	169	0.80
Transmembrane Helix	170	190	0.92
Cytoplasmic	191	210	0.93
Transmembrane Helix	211	234	0.89
Non-Cytoplasmic	235	248	0.83
Transmembrane Helix	249	268	0.91
Cytoplasmic	269	276	0.86
Transmembrane Helix	277	296	0.95
Non-Cytoplasmic	297	317	0.91
Transmembrane Helix	318	338	0.92
Cytoplasmic	339	344	0.86
Transmembrane Helix	345	368	0.87
Non-Cytoplasmic	369	383	0.82
Transmembrane Helix	384	405	0.87
Cytoplasmic	406	414	0.89
Transmembrane Helix	415	437	0.89
Non-Cytoplasmic	438	448	0.79
Transmembrane Helix	449	473	0.82
Cytoplasmic	474	482	0.85
Transmembrane Helix	483	504	0.94
Non-Cytoplasmic	505	522	0.94
Transmembrane Helix	523	544	0.93
Cytoplasmic	545	660	0.99
Transmembrane Helix	661	683	0.94
Non-Cytoplasmic	684	695	0.85
Transmembrane Helix	696	716	0.86
Cytoplasmic	717	872	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFSNLPAE NLTIAVNMTK TLPTAVMHGF NSTNDPPSMS ITRLFPALLE CFGIVLCGYI  60
   61 AGRANVITST QAKGLGNFVS RFALPALLFK NMVVLNFSNV DWSFLYSILI AKASVFFIVC 120
  121 VLTLLVASPD SRFSKAGLFP IFATQSNDFA LGYPIVEALY QTTYPEYLQY IYLVAPISLM 180
  181 MLNPIGFIFC EIQKWKDTQN ASQNKIKIVG LGLLRVLQNP IVFMVFIGIA FNFILDRKVP 240
  241 VYVENFLDGL GNSFSGSALF YLGLTMVGKI KRLKKSAFVV LILLITAKLL VLPLLCREMV 300
  301 ELLDKGDSVV NHTSLSNYAF LYGVFPVAPG VAIFATQFNM EVEIITSGMV ISTFVSAPIM 360
  361 YVSAWLLTFP TMDPKPLAYA IQNVSFDISI VSLISLIWSQ AILLLSKKYK QLPHMLTTNL 420
  421 LIAQSIVCAG MMIWNFVKEK NFVGQILVFV LLYSSLYSTY LWTGLLAISL FLLKKRERVQ 480
  481 IPVGIIIISG WGIPALLVGV LLITGKHSGD SIDSAFFYGK EQMITTAVTL FCSILIAGIS 540
  541 LMCMNRTAQA GSYEGFDQSQ SHKVVEPGNT AFEEGPAPVN EPELFTSSIP ETSCCSCSMG 600
  601 NGELHCPSIE PIANTSTSEP VIPSFEKNNH CVSRCNSQSC ILAQEEEQYL QSGDQQLTRH 660
  661 VLLCLLLIIG LFANLSSCLW WLFNQEPGRL YVELQFFCAV FNFGQGFISF GIFGLDKHLI 720
  721 ILPFKRRLEF LWNNKETAEN RDSPVSEEIK MTCQQFIHYH RDLCIRNIVK ERRCGAKTSA 780
  781 GTFCGCDLVN WLIEVGLASD RGEAVIYGDR LVQGGVIQHI TNEYEFRDEY LFYRFLQKSP 840
  841 EQSPPVINAN TLQQERYKEI EHSSPPSHSP KT