YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55729620
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSKLAHLQR FAVLSRGVHF SVASATSVAT KKTVQGPPTS DDIFEREYKY GAHNYHPLPV  60
   61 ALERGKGIYL WDVEGRKYFD FLSSYSAVNQ GHCHPKIVNA LKSQVDKLTL TSRAFYNNVL 120
  121 GEYEEYITKL FNYHKVLPMN TGVEAGETAC KLARKWGYTV KGIQKYRAKI IFAAGNFWGR 180
  181 TLSAISSSTD PTSYDGFGPF MPGFDIIPYN DLPALERALQ DPNVAAFMVE PIQGEAGVVV 240
  241 PDPGYLMGVR ELCTRHQVLF IADEIQTGLV RTGRWLAVDY ENVRPDIVLL GKALSGGLYP 300
  301 VSAVLCDDDI MLTIKPGEHG STYGGNPLGC RVAIAALEVL EEENLAENAG KLGLILRNEL 360
  361 MKLPSDVVTA IRGKGLLNAI VIKETKDCDA WKVCLRLRDN GLLAKPTHGD IIRLSPPLVI 420
  421 KEDELRESIE IINKTILSF

Type	Start	End	Confidence
Signal Peptide	1	25	0.82
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	439	0.99