YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55729113\|emb\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRGVGARVYA DAPAELLLPP PAAWDLAVRL RGAEAASERQ AYSVTMKLLH PAFQSCLLLT  60
   61 LLGLWRTTPE AHASSPGAPA ISAASFLQDL IHRYGEGDSL TLQQLKALLN HLDVGVGRGN 120
  121 VTQHVQGHRN LSTCFSSGDL FAAHNFSEQS RIGSSELQEF CPTILQQLDS RACTSENQEN 180
  181 EENEQTEEGW PSAVEVWGYG LLCVTVISLC SLLGASVVPF MKKTFYKRLL LYFIALAIGT 240
  241 LYSNALFQLI PEAFGFNPLE DYYVSKSAVV FGGFYLFFFT EKILKILLKQ KNEHHHGHSH 300
  301 YASETLPSKK DQEEGVMEKL QNGDLDHMIP QHCNSELDGK APVVDEKVIV GSLSVQDLQA 360
  361 SQSACYWLKG VRYSDIGTLA WMITLSDGLH NFIDGLAIGA SFTVSVFQGI STSVAILCEE 420
  421 FPHELGDFVI LLNAGMSIQQ ALFFNFLSAC CCYLGLAFGI LAGSHFSANW IFALAGGMFL 480
  481 YISLADMFPE MNEVCQEDER KGSILIPFVI QNLGLLTGFT IMVVLTMYSG QIQIG

Type	Start	End	Confidence
Cytoplasmic	1	47	0.52
Transmembrane Helix	48	65	0.48
Non-Cytoplasmic	66	195	0.96
Transmembrane Helix	196	220	0.88
Cytoplasmic	221	228	0.90
Transmembrane Helix	229	250	0.92
Non-Cytoplasmic	251	261	0.91
Transmembrane Helix	262	280	0.90
Cytoplasmic	281	440	0.83
Transmembrane Helix	441	462	0.90
Non-Cytoplasmic	463	467	0.59
Transmembrane Helix	468	488	0.87
Cytoplasmic	489	503	0.72
Transmembrane Helix	504	528	0.84
Non-Cytoplasmic	529	535	0.66