YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCS2_PONAB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAAQGGR SGGIGGCIGA GGASNCGTGS GRSGLLDKWK IDDKPVKIDK WDGSAVKNSL  60
   61 DDSAKKVLLE KYKYVENFGL IDGRLTICTI SCFFAIVALI WDYMHPFPES KPVLALCVIS 120
  121 YFVMMGILTI YTSYKEKSIF LVAHRKDPTG MDPDDIWQLS SSLKRFDDKY TLKLTFISGR 180
  181 TKQQREAEFT KSIAKFFDHS GTLVMDAYEP EISRLHDSLA IERKIK

Type	Start	End	Confidence
Cytoplasmic	1	82	0.87
Transmembrane Helix	83	104	0.89
Non-Cytoplasmic	105	111	0.84
Transmembrane Helix	112	134	0.91
Cytoplasmic	135	226	0.94