YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|207029860
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGLFSRWRT KPSTVEVLES IDKEIQALEE FREKNQRLQK LWVGRLILYS SVLYLFTCLI  60
   61 VYLWYLPDEF TARLAMTLPF FAFPLIIWSI RTVIIFFFSK RTERNNEALD DLKSQRKKIL 120
  121 EEVMEKETYK TAKLILERFD PDSKKAKECE PPSAGGAVTA RPGQEIRQRT AAQRNLSPTP 180
  181 ASPNQGPPPQ VPVSPGPPKD SSAPGGPPER TVTPALSSNV LPRHLGSPAT SVPGMGPPLA 240
  241 RPILPRERGA LDRIVEYLVG DGPQNRYALI CQQCFSHNGM ALKEEFEYIA FRCAYCFFLN 300
  301 PARKTRPQAP RLPEFSFEKR QVVEGSSSVG PLPSGSVLSS DNQFNEESLE QDVLDNNTEQ 360
  361 TDDKIPATEQ TNQVIEKASD SEEPEEKQET ENEEASVIET NSTVPGADSI PDPELNGESL 420
  421 TTE

Type	Start	End	Confidence
Cytoplasmic	1	41	0.97
Transmembrane Helix	42	66	0.89
Non-Cytoplasmic	67	73	0.86
Transmembrane Helix	74	95	0.89
Cytoplasmic	96	423	0.96