YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM41B_PONPY
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGRVAERS QMGADHTTPV GDGAAGTRGP AAPGSRDYQK EKSWAEAGSA RMSLLILVSI  60
   61 FLSAAFVMFL VYKNFPQLSE EERVNMKVPR DMDDAKALGK VLSKYKDTFY VQVLVAYFAT 120
  121 YIFLQTFAIP GSIFLSILSG FLYPFPLALF LVCLCSGLGA SFCYMLSYLV GRPVVYKYLT 180
  181 EKAVKWSQQV ERHREHLINY IIFLRITPFL PNWFINITSP VINVPLKVFF IGTFLGVAPP 240
  241 SFVAIKAGTT LHQPTTAGEA VSWNSIFILM ILAVLSILPA IFQKKLKQKF E

Type	Start	End	Confidence
Cytoplasmic	1	51	0.79
Transmembrane Helix	52	72	0.92
Non-Cytoplasmic	73	116	0.78
Transmembrane Helix	117	138	0.83
Cytoplasmic	139	146	0.52
Transmembrane Helix	147	168	0.91
Non-Cytoplasmic	169	195	0.76
Transmembrane Helix	196	216	0.75
Cytoplasmic	217	225	0.65
Transmembrane Helix	226	248	0.82
Non-Cytoplasmic	249	259	0.82
Transmembrane Helix	260	282	0.90
Cytoplasmic	283	291	0.85