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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|55727716
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAAAASNWG LITNIVNSIV GVSVLTMPFC FKQCGIVLGA LLLVFCSWMT HQSCMFLVKS  60
   61 ASLSKRRTYA GLAFHAYGKA GKMLVETSMI GLMLGTCIAF YVVIGDLGSN FFARLFGFQV 120
  121 GGTFRMFLLF AVSLCIVLPL SLQRNMMASI QSFSAMALLF YTVFMFVIVL SSLKHGLFSG 180
  181 QWLRRVSYVR WEGVFRCIPI FGMSFACQSQ VLPTYDSLDE PSVKTMSSIF ASSLNVVTTF 240
  241 YVMVGFFGYV SFTEATAGNV LMHFPSNLVT EMLRVGFMMS VAVGFPMMIL PCRQALSTLL 300
  301 CEQQQKDGTF AAGGYMPPLR FKALTLSVVF GTMVGGILIP NVETILGLTG ATMGSLICFI 360
  361 CPALIYKKIH KNALSSQVVL WVGLGILVVS TVTTLSVSED VPEDLAEEAP GGRLGEAEGL 420
  421 MKVEAARLSA QDPVVAVAED GREKPKLPKE REELEQAQIK GPVDVPGRED GKEAQEEAQL 480
  481 DRPGQGIAVP VGEAHRHEPP VPHDKVVVDE GQDQEVPEEN KPPSRHAGRK APGVQGQMAP 540
  541 PLPDSEREKR EPEQGEVGKR PGQAQALEEA GDLPEDPQKV PEADGQPAVQ PAKEDLEPGD 600
  601 GGLHPRPQAV LSEQQNGLAV DEGEKAEGVP PPGNAAGDTG QPAEDSDHGG KPPLPEEKPA 660
  661 PGAGLPPEPR EQRDVERAGG DQAASQLEEA GRAEMLDHAV LLQVIKEQQV QQKRLLDQQE 720
  721 KLLAVIEEQH KEIHQQRQED EEDKPRQVEV HPEPGAAVPR GQEAPEGKAR ETMENLPPLP 780
  781 LDPVLRAPGG RPAPSQDLNQ RSLEHPERPV GRDPAGPPDG GPDTEPRAAQ AKPRDGQKDA 840
  841 APGAAGTVKE LLKGLEQVPV PDPAREAGGP EERLAEEFPG QSQDVTGGGS QDRKKPGKEV 900
  901 AATGTGILKE ANWLVAGPGA EMGDPHMKPK QMSRDLGLAV DLPGGAEGAA AQPQAVLRQP 960
  961 ELRVISDGEQ GGQQGHRLDH GGYLEMRKEA RGGDHMPVSH EQLGGEEDAA VPEPRQRPEP1020
 1021 ELGLKQAVPG GQRPDNAKPN RDLKLQAGSD LRRRRRDLGP HAEGELAPRD RVIIGLNPLP1080
 1081 DVQVNDLRGA LDAQLRQAAG GALQVVHSRQ LRQAPGAPEE S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle