YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55727194
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLRTSVLL WSLLRSSPGV ERVCLRARIQ PWRGGLLQPQ PCSFEMGLPR RRFSSDAAES  60
   61 GSPETKKPTF MDEEVQSILT KMTGLNLQKT FKPAIQELKP PTYKLMTQAQ LEEATRQAVE 120
  121 AAKVRLKMPP VLEERVPIND VLAEDKILEG TETTKYVFTD ISYSIPHRER FIVVREPSGT 180
  181 LRKAFWEERD RMIQVYFPKE GRKILTPIIF QEENLRTMYS QDRHVDVLNL CFAQFEPDST 240
  241 EYIKVHHKTY EDIDKHGKYD LLRSTRYFGG MVWYFVNNKK IDGLLIDQIQ RDLIDDATNL 300
  301 VQLYHMLHPD GQSAQEAKDQ AAEGINLIKV FAKTEAQKGA YIELTLQTYQ EALSRHSAAS 360
  361

Type	Start	End	Confidence
Signal Peptide	1	19	0.96
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	360	0.99