YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SFXN3_PONPY
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGELPLDINI QEPRWDQSTF LGRARHFFTV TDPRNLLLSG AQLEASRNIV QNYRAGVVTP  60
   61 GITEDQLWRA KYVYDSAFHP DTGEKVVLIG RMSAQVPMNM TITGCMLTFY RKTPTVVFWQ 120
  121 WVNQSFNAIV NYSNRSGDTP ITVRQLGTAY VSATTGAVAT ALGLKSLTKH LPPLVGRFVP 180
  181 FAAVAAANCI NIPLMRQREL QVGIPVADEA GQRLGYSVTA AKQGIFQVVI SRICMAIPAM 240
  241 AIPPLIMDTL EKKDFLKRRP WLGAPLQVGL VGFCLVFATP LCCALFPQKS SIHVSKLEPE 300
  301 LRAQIHEQNP SIEVVYYNKG L

Type	Start	End	Confidence
Cytoplasmic	1	173	0.62
Transmembrane Helix	174	195	0.71
Non-Cytoplasmic	196	223	0.57
Transmembrane Helix	224	247	0.71
Cytoplasmic	248	262	0.59
Transmembrane Helix	263	287	0.84
Non-Cytoplasmic	288	321	0.64