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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|55726896|emb|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPTILVAT AVHAYRYTNG QYVKQGKFGA AVLGNHTARE YRILLYISQQ QPVTVARIHV  60
   61 NFELMVRPNN YSTFYDDQRQ NWSIMFESEK AAVEFNKQVC IAKCNSTSSL DAVLSQDLIV 120
  121 ADGPAVEVGD SLEVAYTGWL FQNHVLGQVF DSAANKDKLL RLKLGSGKVI KGWEDGMLGM 180
  181 KKGGKRLLII PPACAVGSEG VIGWTQATDL ILVFEVEVRR VKFARDSGSD GHSVSSRDSA 240
  241 APSPILGADN LSADPVVSLP TSIPFKSGEP ALRTKSNSLS EQLAINTSPD AVKAKLISRM 300
  301 AKMGQPMLPI LPPQLDSNDS EIEDVNALRG GGQPVVTPSV QPSLQPAHPA LPQMTSQAPQ 360
  361 PSVSGLQAPS AALMQVSSLD SHSAVSGNAQ SFQPYAGMQA YTYPQASAVT SQLQPVRPLY 420
  421 PAPLSQPPHF QGSGDMASFL MTEARQHNTE IRMAVSRVAD KMDHLMTKVE GSQKHSAGNS 480
  481 MLIPSMSVTM ETSMIMSNIQ RIIQENERLK QEILEKSNRI EEQNDKISEL IERNQRYVEQ 540
  541 SNLMMEKRNN SLQTATENTQ ARVLHAEQEK AKVTEELAAA TAQVSHLQLK MTAHQKKETE 600
  601 LQMQLTESLK ETDLLRGQLT KVQAKLSELQ ETSEQAQSKF KSEKQSRKQL ELKVTSLEEE 660
  661 LTDLRVEKES LEKNLSERKK KSAQERSQAE EEIDEIRKSY QEELDKLRQL LKKTRVSTDQ 720
  721 AAAEQLSLVQ AELQTQWEAK CEHLLASAKD EHLQLYQEVC AQRDAYQQKL VQLQEKCLAL 780
  781 QAQITALTKQ NEQHVKELEK NKSQMSGIEA AASDPSEKVK KIMNQVFQSL RREFELEESY 840
  841 NGRTILGTIM NTIKMVTLQL LNQQEQEKEE SSSEEEEEKA EERPRRPSQE QSASASSGQP 900
  901 QAPLNRQRPE SPMVPSEQVV EEAVLLPLQA LTTSQDDGHR RKGDSEAEAL SEIKDGSLPP 960
  961 ELSCIPSHRV LGPPTSIPPE PPGPVSMDSE CEESLAASPM AAKPDNPPGK VCVREVAPDG1020
 1021 PLQESSTRLS LTSDPEEGDP LALGPESPGD PQPPQLKKDD VTSSTGPHKE LSSTEAGSTV1080
 1081 AGAALRPSRH SQRSSLSGDE EDELFKGATL KALRPKAQPE EEDEDEVVRK SQALSSPHTP1140
 1141 TWGLFPTGSE KRNGACWWPT PWTLCAGPCG SRLGAGLGGY SSVSRVGDGH ITTLLLRKNH1200
 1201 SLCPCRNMGQ ILSPHVSARV DFAFCQNLEQ RAVMDLCSSL YVSEPFPLAC VPLGNVPVPS1260
 1261 ISLSSQELNF RLRIENTNSA LKKRKKPS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle