YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCN3_PONAB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.99
Transmembrane Helix	125	146	0.92
Non-Cytoplasmic	147	212	0.96
Transmembrane Helix	213	234	0.91
Cytoplasmic	235	255	0.86
Transmembrane Helix	256	277	0.84
Non-Cytoplasmic	278	312	0.57
Transmembrane Helix	313	337	0.81
Cytoplasmic	338	347	0.54
Transmembrane Helix	348	366	0.61
Non-Cytoplasmic	367	386	0.84
Transmembrane Helix	387	407	0.91
Cytoplasmic	408	425	0.76
Transmembrane Helix	426	443	0.92
Non-Cytoplasmic	444	498	0.86
Transmembrane Helix	499	520	0.80
Cytoplasmic	521	550	0.62
Transmembrane Helix	551	570	0.60
Non-Cytoplasmic	571	571	0.35
Transmembrane Helix	572	597	0.48
Cytoplasmic	598	801	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESEQLFHRG YYRNSYNSIT SASSDEELLD GAGVIMDFQT SEDDNLLDGD TAVGTHYTMT  60
   61 NGGSINSSTH LLDLLDEPIP GVGTYDDFHT IDWVREKCKD RERHRRINSK KKESAWEMTK 120
  121 SLYDAWSGWL VVTLTGLASG ALAGLIDIAA DWMTDLKEGI CLSALWYNHE QCCWGSNETT 180
  181 FEERDKCPQW KTWAELIIGQ AEGPGSYIMN YIMYIFWALS FAFLAVSLVK VFAPYACGSG 240
  241 IPEIKTILSG FIIRGYLGKW TLMIKTVTLV LAVASGLSLG KEGPLVHVAC CCGNIFSYLF 300
  301 PKYSTNEAKK REVLSAASAA GVSVAFGAPI GGVLFSLEEV SYYFPLKTLW RSFFAALVAA 360
  361 FVLRSINPFG NSRLVLFYVE YHTPWYLFEL FPFILLGVFG GLWGAFFIRA NIAWCRRRKS 420
  421 TKFGKYPVLE VIIVAAITAV IAFPNPYTRL NTSELIKELF TDCGPLESSS LCDYRNDMNA 480
  481 SKIVDDIPDR PAGIGVYSAI WQLCLALIFK IIMTVFTFGI KVPSGLFIPS MAYYHHDWFI 540
  541 FKEWCEVGAD CITPGLYAMV GAAACLGGVT RMTVSLVVIV FELTGGLEYI VPLMAAVMTS 600
  601 KWVGDAFGRE GIYEAHIRLN GYPFLDAKEE FTHTTLAADV MRPRRNDPPL AVLTQDNMTV 660
  661 DDIENMINET SYNGFPVIMS KESQRLVGFA LRRDLTIAIE SARKKQEGIV GSSRVCFAQH 720
  721 TPSLPAESPR PLKLRSILDM SPFTVTDHTP MEIVVDIFRK LGLRQCLVTH NGRLLGIITK 780
  781 KDILRHMAQT ANQDPASIMF N