YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50198979
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPGPSIPLR RAALFLAAIS ISCFVLYRAA DSLSFSPPIF DLSSYLDNEE PKLEDVLSKA  60
   61 ATRDRTVVLT TLNAAWAAPG SVIDLFFESF RIGEETSQIL DHLVIVALDA KAYSRCLELH 120
  121 KHCFSLVTEG VDFSREAYFM TRSYLKMMWR RIDLLRSVLE MGYNFVFTDA DVMWFRNPFP 180
  181 RFYMYADFQI ACDHYLGRSN DLHNRPNGGF NFVRSNNRTI LFYKYWYASR LRFPGYHDQD 240
  241 VLNFLKAEPF VFRIGLKMRF LNTAYFGGLC EPSRDLNLVR TMHANCCYGM ESKLHDLRIM 300
  301 LQDWKDFMSL PLHLKQSSGF SWKVPQNCSL DSLRRYDESV EDDEESDPPG ESQD

Type	Start	End	Confidence
Signal Peptide	1	29	0.85
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	354	0.99