YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1841552
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.51
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLLLFLLL LFLLPTLWFC SPSAKYFFKM AFYNGWILFL AVLAIPVCAV RGRNVENMKI  60
   61 LRLMLLHIKY LYGIRVEVRG AHHFPPSQPY VVVSNHQSSL DLLGMMEVLP GRCVPIAKRE 120
  121 LLWAGSAGLA CWLAGVIFID RKRTGDAISV MSEVAQTLLT QDVRVWVFPE GTRNHNGSML 180
  181 PFKRGAFHLA VQAQVPIVPI VMSSYQDFYC KKERRFTSGQ CQVRVLPPVP TEGLTPDDVP 240
  241 ALADRVRHSM LTVFREISTD GRGGGDYLKK PGGGG

Type	Start	End	Confidence
Signal Peptide	1	22	0.90
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	35	0.90
Transmembrane Helix	36	55	0.53
Cytoplasmic	56	120	0.54
Transmembrane Helix	121	139	0.48
Non-Cytoplasmic	140	275	0.76