YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACBD4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTEKEEPDC QKQFQAAVSV IQNLPKNGSY RPSYEEMLRF YSYYKQATAG PCLVPRPGFW  60
   61 DPIGRYKWDA WNSLGKMSRE EAMSAYITEM KLVAQKVIDT VPLGEVAEDM FGYFEPLYQV 120
  121 IPDMPRPPET FLRRVTGWQE PAVNRDVQAA PEPSHPPKEP APPSPESRLP RDLDLEVFCD 180
  181 SVEQLEPELV RVPVLSPVPA ESELPHLHTG TGDSAQRVWA EQKEAAGREL TTRSSPESPE 240
  241 GFGGSLMGPQ ELDRWLVGTV QAMQESMKDV HRRLQILESK PQPLEQQRSP RTRPWPLGLS 300
  301 TPTLLFFILW PFVVQWLFRQ FRTQRR

Type	Start	End	Confidence
Non-Cytoplasmic	1	294	0.93
Transmembrane Helix	295	318	0.90
Cytoplasmic	319	326	0.90