YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49903126, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPMPSATDG GDRSATPSGL SASQRRAELR RRKLLMNSEQ RINRIMGFHR PGSGAEEENQ  60
   61 TKSKPLDSDI LNPLGVPSVS KRVVLGDSVD GGVTDYQPSG GADIRGAQLG DKLDSFIKAP 120
  121 ECSSKDGVEL RQRNRGDLTA DSAPRGSHHG LEQYLSRFEE AMKLRKQLIS EKPSQEDGRT 180
  181 TEEFDSFRIF RLVGCALLAL VVRAFVCKYL SIFAPFLTLQ LAYMGLYKYF PKGEKKVKTT 240
  241 VLTAALLLSG IPAEVINRSM DTYSKMGEVF TDLCVYFFTF IFCHEVLEYW GPEVP

Type	Start	End	Confidence
Cytoplasmic	1	188	0.74
Transmembrane Helix	189	207	0.71
Non-Cytoplasmic	208	211	0.54
Transmembrane Helix	212	230	0.51
Cytoplasmic	231	268	0.41
Transmembrane Helix	269	287	0.39
Non-Cytoplasmic	288	295	0.54