YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49089376
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTYPQIDPV ALAIGPLKIH WYGLMYLIGI GGAWLLASRR MKRFDPTWTK ERLSDLVFWV  60
   61 ACGVILGGRL GYVLFYNLDE YIANPTLIFE VWKGGMSFHG GLLGVMLAVW WFGKRHGKSF 120
  121 FQLMDFIAPL VPIGLGAGRI GNFINSELWG KVSDVPWAMV FPNGGPLPRH PSQLYQFALE 180
  181 GVALFVILWL FTRKPRPTAS VSGLFVLCYG IFRFVVEFVR VPDAQLGYLA WGWLTMGQVL 240
  241 CVPMVLAGIA LMVWAYRRDA AQPKAAG

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.95
Transmembrane Helix	19	37	0.97
Cytoplasmic	38	55	0.92
Transmembrane Helix	56	76	0.93
Non-Cytoplasmic	77	94	0.89
Transmembrane Helix	95	113	0.95
Cytoplasmic	114	120	0.90
Transmembrane Helix	121	141	0.90
Non-Cytoplasmic	142	172	0.92
Transmembrane Helix	173	192	0.94
Cytoplasmic	193	198	0.89
Transmembrane Helix	199	219	0.88
Non-Cytoplasmic	220	233	0.80
Transmembrane Helix	234	256	0.92
Cytoplasmic	257	267	0.98