YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24935016
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.95
Transmembrane Helix	8	29	0.92
Cytoplasmic	30	39	0.76
Transmembrane Helix	40	60	0.93
Non-Cytoplasmic	61	86	0.91
Transmembrane Helix	87	109	0.91
Cytoplasmic	110	118	0.90
Transmembrane Helix	119	139	0.92
Non-Cytoplasmic	140	145	0.80
Transmembrane Helix	146	166	0.93
Cytoplasmic	167	177	0.89
Transmembrane Helix	178	200	0.85
Non-Cytoplasmic	201	221	0.89
Transmembrane Helix	222	241	0.93
Cytoplasmic	242	259	0.84
Transmembrane Helix	260	280	0.92
Non-Cytoplasmic	281	287	0.73
Transmembrane Helix	288	310	0.90
Cytoplasmic	311	323	0.77
Transmembrane Helix	324	342	0.87
Non-Cytoplasmic	343	352	0.65
Transmembrane Helix	353	372	0.92
Cytoplasmic	373	391	0.90
Transmembrane Helix	392	413	0.91
Non-Cytoplasmic	414	423	0.88
Transmembrane Helix	424	446	0.87
Cytoplasmic	447	517	0.96
Transmembrane Helix	518	540	0.92
Non-Cytoplasmic	541	576	0.94
Transmembrane Helix	577	598	0.90
Cytoplasmic	599	704	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTYQYGWI IPFIPLPVPI AIGVGLLLVP AATKSLGRMW AFFSVLLLSI LMIFSADLSI  60
   61 QQINGSFLHQ YVWSWTNNDF SLEFGYLIDP LTSIMLILIA TVGIMVLFYS DNYMSHDQGY 120
  121 LRFFAYISFS NASMLGLVTS SNLIQIYIFW ELVGMCSYLL IGFWFTRPIA ASACQKAFVT 180
  181 NRVGDFGLLL GILGFYFITG SFEFRDLFEI TNNLIDNDEV NSILLTLCAS LLFVGAVAKS 240
  241 AQFPLHVWLP DAMEGPTPIS ALIHAATMVA AGIFLVARLL PLFTAIPYVM NFISLIGIIT 300
  301 ILLGATLALA QRDIKRCLAY STMSQLGYTM LALGMGSYRA ALFHLITHAY SKALLFLGSG 360
  361 SIIHSMETVI GYSPEKSQNM ALMGGLTKYM PITKISFLLG TLSLCGIPPL ACFWSKDEIL 420
  421 NDSWLYSPIF AIIACFPAGL TAFNMFRMYF LTFEGHLNAH FQNFSGKKNS SFSSISLWGK 480
  481 NGVKAINPNF VLSPMAINNN KSAPPFSKKR YPLESDNTML LPLLVLVLLT LFVGSVGIPF 540
  541 DFDQKGIYFD ILSKWLTPSI NLLHSNSNNS VDWYEFVTNA FFSVSIALFG LFIASLLYRP 600
  601 FYSSFQNLDL INSFVKIGPK RIFWDKIINV IYNWSYNRGY VDIFYATTFT RGIRGVAELI 660
  661 SFFDKQVIDG ITNGVGITSF FVGEGIKYVG GGRISSYPFF YLFY