YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24935014
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.95
Transmembrane Helix	8	30	0.90
Cytoplasmic	31	39	0.83
Transmembrane Helix	40	60	0.94
Non-Cytoplasmic	61	87	0.92
Transmembrane Helix	88	110	0.90
Cytoplasmic	111	119	0.89
Transmembrane Helix	120	140	0.92
Non-Cytoplasmic	141	146	0.80
Transmembrane Helix	147	167	0.93
Cytoplasmic	168	178	0.89
Transmembrane Helix	179	201	0.85
Non-Cytoplasmic	202	222	0.89
Transmembrane Helix	223	242	0.93
Cytoplasmic	243	259	0.85
Transmembrane Helix	260	281	0.90
Non-Cytoplasmic	282	287	0.72
Transmembrane Helix	288	310	0.91
Cytoplasmic	311	318	0.87
Transmembrane Helix	319	343	0.68
Non-Cytoplasmic	344	353	0.58
Transmembrane Helix	354	373	0.81
Cytoplasmic	374	392	0.89
Transmembrane Helix	393	414	0.92
Non-Cytoplasmic	415	424	0.86
Transmembrane Helix	425	447	0.89
Cytoplasmic	448	517	0.94
Transmembrane Helix	518	540	0.92
Non-Cytoplasmic	541	575	0.95
Transmembrane Helix	576	598	0.89
Cytoplasmic	599	704	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTYQYGWI IPFIPLPVPI AIGVGLLLVP AATKSLRRMW AFFSVLLLSI IMIFSADLSI  60
   61 QQINGSFLHQ YVWSWTINND FSLEFGYLID PLTSIMLILI ATVGIMVLIY SDNYMSHDQG 120
  121 YLRFFAYIGF SNASMLGLVT SSNLIQIYIF WELVGMCSYL LIGFWFTRPI AASACQKAFV 180
  181 TNRVGDFGLL LGILGFYFIT GSFEFRDLFE ITNNLIDNDE VNSFLLTLCA SLLFVGAFAK 240
  241 SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFTAILYV MNFISLIGII 300
  301 TILLGATLAL AQRDIKRCLA YSTMSQLGYT MLALGMGSDR AALVHLITHA YSKALLFLGS 360
  361 GSIIHSMEPV IGYSPEKSQN MALMGGLRKY MPITKISFLL GTLSLCGIPP LACFWSKDEI 420
  421 LNDSWLYSPI FAIIACFTAG LTAFYMFRMY LLTFEGHLNA HFQNYSGKKN SPFSSISIWG 480
  481 KNGVKVITPN LVLSTMAINN KSAPLFSKKR YPLESDNTML LPLLVLVLLT LFVGSVGIPF 540
  541 DFDQKGIYFD ILSKWLTPSI NLLHSNSNNS VDWYEFVTNA IFSVSIALFG LFIASLLYRP 600
  601 VYSSFQNLDL INSFVKMGPK RIFWDKIINV IYNWSYNRGY VDIFYATTFT RGIRGVAELI 660
  661 SFFDRQVIDG ITNGVGITSF FVGEGIKYVG GGRISSYLFF YLFY