YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24935010
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.95
Transmembrane Helix	8	29	0.92
Cytoplasmic	30	38	0.82
Transmembrane Helix	39	61	0.89
Non-Cytoplasmic	62	87	0.92
Transmembrane Helix	88	110	0.90
Cytoplasmic	111	119	0.89
Transmembrane Helix	120	140	0.92
Non-Cytoplasmic	141	146	0.79
Transmembrane Helix	147	167	0.93
Cytoplasmic	168	178	0.89
Transmembrane Helix	179	201	0.85
Non-Cytoplasmic	202	222	0.87
Transmembrane Helix	223	242	0.92
Cytoplasmic	243	260	0.85
Transmembrane Helix	261	281	0.93
Non-Cytoplasmic	282	288	0.76
Transmembrane Helix	289	311	0.90
Cytoplasmic	312	318	0.91
Transmembrane Helix	319	343	0.73
Non-Cytoplasmic	344	353	0.56
Transmembrane Helix	354	373	0.81
Cytoplasmic	374	392	0.88
Transmembrane Helix	393	414	0.91
Non-Cytoplasmic	415	424	0.86
Transmembrane Helix	425	447	0.90
Cytoplasmic	448	517	0.94
Transmembrane Helix	518	537	0.94
Non-Cytoplasmic	538	572	0.57
Transmembrane Helix	573	598	0.85
Cytoplasmic	599	701	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTYQYGWI IPFVPLPVPI AIGAGLLLVP TATKSLRRIW AFPSVLLLSI IMIFSADLSI  60
   61 HQINGSFIHQ YVWSWTIHND FSLEFGYLID PLTSIMLILI TTVGILVLIY SDNYMSHDQG 120
  121 YLRFFAYMSF FNVSMLGLVT SSNLIQIYIF WELVGMCSYL LIGFWFTRPI AANACQKAFV 180
  181 TNRIGDFGLL LGILGFYFIT GSFEFRDLFE ITNSLIDNDG VNSVFLTLCA SLLFVGAVAK 240
  241 SAQFPLHVWL PDAMEGPTPI SALIHAATMV AAGIFLVARL LPLFTAVPYV MNFISLIGII 300
  301 TILLGATLAL AQRDIKRSLA YSTMSQLGYM MLALGMGSDR AALFHLITHA YSKALLFLGS 360
  361 GSIIRSMETF IGYSPNKSQN MALMGGLRKY LPITKTAFLL GTLSLCGIPP LACFWSKDEI 420
  421 LNDSWLYSSI FGIIACFTAG LTAFYMFRMY LLTFEGQLNV HLKTYSGKKN SSFYSISIWG 480
  481 KEGSKLIKPN DVLSTIKNTE SASKKKTCMY PHESDNTMLL PLLVLVFLTL FVGSIGIPFD 540
  541 QGGIVFDILS IWLTPSINLL HSNSTNSMDW YEFVTNAIFS VSISFFGIFI ASLFYMPVYS 600
  601 SFRNFELLNS FVKKGPKKIF WDKITNLIYN WSYNRGYIDV FYEIIFTRGI RGLAELSSFF 660
  661 DRQLIDGIPN GIGVTSFFVG EGIKYVGGGR ISSYLFLYLF Y