YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y1609_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLVNSSLT CSSLTLNLLP ILRTETPSLS RKRRAAYVAA TSSRDVNDTA ADSSQKLTKF  60
   61 VTFLGKGGSG KTTAAVFAAQ HYALAGLSTC LVIHNQDPSA EFLLGSKIGT SPTLINDNLS 120
  121 VIRLETTKML LEPLKQLKQA DARLNMTQGV LEGVVGEELG VLPGMDSIFS MLELERLVGF 180
  181 FRQATRKNHK GKPFDVIIYD GISTEETLRM IGLSSKTRLY AKYLRSLAEK TDLGRLTSPS 240
  241 IMRFVDESMN INSNKSPFDG MTSPAMWDTL ERFLETGASA WRDPERFRSF LVMDPNNPMS 300
  301 VKAALRYWGC TVQAGSHVSG AFAISSSHLT SQIPKADFVP LPFASASVPF TITGLDWDKI 360
  361 LLDQANSSIR ELLSETVSHG TSLTQTVMFD TAKKLVTLFM PGFEKSEIKL YQYRGGSELL 420
  421 IEAGDQRRVI HLPSQIQGKV GGAKFVDRSL IVTMR

Type	Start	End	Confidence
Signal Peptide	1	24	0.64
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	455	0.98