YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49333437
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMGMEIVGI ALGVLGFIIT IVSTALPMWR VTAFIGANII TAQTIWEGLW MNCVTQSTGQ  60
   61 MQCKVYDSLL ALTPELQASR AMMIIAIILG VLGVMISIVG AKCTNCIEEE GAKAKVMIIA 120
  121 GIFFILGGVL VLIPVSWTAH VVIRDFYNPI LNNSQRRELG AALYIGWAAA ALLLIGGAML 180
  181 CSSCPPKEEK YKPPRMAYST PRSASAGGVY DRKDYV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	29	0.90
Non-Cytoplasmic	30	80	0.88
Transmembrane Helix	81	101	0.93
Cytoplasmic	102	115	0.85
Transmembrane Helix	116	140	0.88
Non-Cytoplasmic	141	160	0.93
Transmembrane Helix	161	184	0.88
Cytoplasmic	185	216	0.97