YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3550619
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKVRKAVI PAAGLGTRFL PATKALAKEM LPIVDKPTIQ FIVEEALKSG IEDILVVTGK  60
   61 SKRSIEDHFD SNFELEYNLK EKGKTDLLKL VDETTGMRLH FIRQTHPRGL GDAVLQAKAF 120
  121 VGNEPFVVML GDDLMDITDE KAVPLTKQLM NDYEKTHAST IAVMPVPHED VSSYGVIAPQ 180
  181 GEGSNGLYSV ETFVEKPAPE ETPSDLAIIG RYLLTPEIFE ILEKQAPGAG NEIQLTDAID 240
  241 TLNKTQRVFA REFTGTRYDV GDKFGFMKTS IDYALKHPQV KDDLKNYLIQ LGKELTEKE

Type	Start	End	Confidence
Signal Peptide	1	27	0.89
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	299	0.99