YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38567177
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNLEKQLT FYGAYHSNHV NVVIHMICVP LILFSAFEIA SNYGPFFTLP SWLQVPYLEP  60
   61 NLGTFAALTW GGLYVLLEPV AGTALALICL GACAFTNYLR IADPVLTTKV AIVVHIVSWL 120
  121 AQFLGHGKFE GRAPALLDNL FQAIFLAPLF VWLELLFMLG YRPELKTRVD KAVAVEIAKF 180
  181 RESRNAKKAQ

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	41	0.92
Non-Cytoplasmic	42	74	0.85
Transmembrane Helix	75	98	0.86
Cytoplasmic	99	104	0.88
Transmembrane Helix	105	125	0.90
Non-Cytoplasmic	126	139	0.87
Transmembrane Helix	140	161	0.90
Cytoplasmic	162	190	0.98