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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40788974
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPRLSRPSPS QSSPTPTTAR GSETRPRRRR QQLQHHLHPP AMEDLDQSPL VSSSDSPPRP  60
   61 QPAFKYQFVR EPEDEEEEEE EEEEDEDEDL EELEVLERKP AAGLSAAPVP TAPAAGAPLM 120
  121 DFGNDFVPPA PRGPLPAAPP VAPERQPSWD PSPVSSTVPA PSPLSAAAVS PSKLPEDDEP 180
  181 PARPPPPPPA SVSPQAEPVW TPPAPAPAAP PSTPAAPKRR GSSGSVDETL FALPAASEPV 240
  241 IRSSAENMDL KEQPGNTISA GQEDFPSVLL ETAASLPSLS PLSAASFKEH EYLGNLSTVL 300
  301 PTEGTLQENV SEASKEVSEK AKTLLIDRDL TEFSELEYSE MGSSFSVSPK AESAVIVANP 360
  361 REEIIVKNKD EEEKLVSNNI LHNQQELPTA LTKLVKEDEV VSSEKAKDSF NEKRVAVEAP 420
  421 MREEYADFKP FERVWEVKDS KEDSDMLAAG GKIESNLESK VDKKCFADSL EQTNHEKDSE 480
  481 SSNDDTSFPS TPEGIKDRSG AYITCAPFNP AATESIATNI FPLLGDPTSE NKTDEKKIEE 540
  541 KKAQIVTEKN TSTKTSNPFL VAAQDSETDY VTTDNLTKVT EEVVANMPEG LTPDLVQEAC 600
  601 ESELNEVTGT KIAYETKMDL VQTSEVMQES LYPAAQLCPS FEESEATPSP VLPDIVMEAP 660
  661 LNSAVPSAGA SVIQPSSSPL EASSVNYESI KHEPENPPPY EEAMSVSLKK VSGIKEEIKE 720
  721 PENINAALQE TEAPYISIAC DLIKETKLSA EPAPDFSDYS EMAKVEQPVP DHSELVEDSS 780
  781 PDSEPVDLFS DDSIPDVPQK QDETVMLVKE SLTETSFESM IEYENKEKLS ALPPEGGKPY 840
  841 LESFKLSLDN TKDTLLPDEV STLSKKEKIP LQMEELSTAV YSNDDLFISK EAQIRETETF 900
  901 SDSSPIEIID EFPTLISSKT DSFSKLAREY TDLEVSHKSE IANAPDGAGS LPCTELPHDL 960
  961 SLKNIQPKVE EKISFSDDFS KNGSATSKVL LLPPDVSALA TQAEIESIVK PKVLVKEAEK1020
 1021 KLPSDTEKED RSPSAIFSAE LSKTSVVDLL YWRDIKKTGV VFGASLFLLL SLTVFSIVSV1080
 1081 TAYIALALLS VTISFRIYKG VIQAIQKSDE GHPFRAYLES EVAISEELVQ KYSNSALGHV1140
 1141 NCTIKELRRL FLVDDLVDSL KFAVLMWVFT YVGALFNGLT LLILALISLF SVPVIYERHQ1200
 1201 AQIDHYLGLA NKNVKDAMAK IQAKIPGLKR KAE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle