YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NDHK_CHAGL
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLNANTQFQ NSFNEDLFDS IKNPVKTSSD KEELSNSIIL TTLNDFSNWA RLSSLWPLLY  60
   61 GTSCCFIEFA ALIGSRFDFD RYGLVPRSSP RQADLIITAG TVTMKMAPSL VRLYEQMPEP 120
  121 KYVIAMGACT ITGGMFSTDS YSTVRGVDKL IPVDIYLPGC PPKPEAIIDA VIKLRKKVGQ 180
  181 ETYFERAKIQ SFHRYFTISH RLKPTYSVEE QLKAKELISN RQENLTISKK KIKESEEIFL 240
  241 QF

Type	Start	End	Confidence
Cytoplasmic	1	55	0.47
Transmembrane Helix	56	74	0.61
Non-Cytoplasmic	75	242	0.69