YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38198154, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDVGEETQ TSHGKDYVDP PPAPLVDMAE LKLWSFYRAL IAEFIATLLF LYITVATVIG  60
   61 YKKQTDPCGG VGILGIAWAF GGMIFILVYC TAGISGGHIN PAVTFGLFLA RKVSLIRAVA 120
  121 YMVAQCLGAI CGVGLVKAFM KNPYNRLGGG ANSVASGYSN GTALGAEIIG TFVLVYTVFS 180
  181 ATDPKRSARD SHVPVLAPLP IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNDKVWDD 240
  241 HWIFWVGPFV GALAAAAYHQ YVLRAAGIKA LGSFRSNPTN

Type	Start	End	Confidence
Cytoplasmic	1	38	0.89
Transmembrane Helix	39	60	0.89
Non-Cytoplasmic	61	73	0.81
Transmembrane Helix	74	97	0.85
Cytoplasmic	98	117	0.76
Transmembrane Helix	118	139	0.93
Non-Cytoplasmic	140	160	0.87
Transmembrane Helix	161	180	0.93
Cytoplasmic	181	192	0.89
Transmembrane Helix	193	213	0.89
Non-Cytoplasmic	214	240	0.88
Transmembrane Helix	241	262	0.93
Cytoplasmic	263	280	0.95