YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38198152, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKEEDVRL GANKYRETQP IGTAAQSQDD KDYTEPPPAP LFEPGELTSW SFYRAGIAEF  60
   61 IATFLFLYIS VLTVMGVVKA PTKCSTVGIQ GIAWAFGGMI FALVYCTAGI SGGHINPAVT 120
  121 FGLFLARKLS LTRALFYMVM QCLGAICGAG VVKGFEGSHD YTRLGGGANS VNPGYTKGDG 180
  181 LGAEIVGTFV LVYTVFSATD AKRSARDSHV PILAPLPIGF AVFLVHLATI PITGTGINPA 240
  241 RSLGAAIIFN KDQGWDDHWI FWVGPFIGAA LAALYHQVVI RAIPFKKC

Type	Start	End	Confidence
Cytoplasmic	1	55	0.91
Transmembrane Helix	56	78	0.83
Non-Cytoplasmic	79	91	0.80
Transmembrane Helix	92	115	0.85
Cytoplasmic	116	133	0.74
Transmembrane Helix	134	155	0.90
Non-Cytoplasmic	156	179	0.90
Transmembrane Helix	180	199	0.89
Cytoplasmic	200	209	0.89
Transmembrane Helix	210	230	0.89
Non-Cytoplasmic	231	257	0.89
Transmembrane Helix	258	279	0.92
Cytoplasmic	280	288	0.90