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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39725571
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEKTACTFNY TKTLKNKYFE PRDSYFQQYM LKGEYQYWFD LEATDHHRDY FAESILVIVV  60
   61 ALLGGRYVLW LLVTYIVLSE QKATGTQYGA GEVVMMGNLL THGSIEVVTY FLLLYLLLRE 120
  121 ESIRKWVLLL YHILVAHPLK SVTVILLMIG DVVKADPGDQ GYLGQVDVCF TMVVLIVIGL 180
  181 IIARRDPTIV PLVTIVASLR VTGLTCGPAV DVTVAVMTIT LLMVSYVTDY FRYKRWLQCI 240
  241 LSLVSGVFLI RSLIHLGRIE TPEVTIPNWR PLTLILLYLI STTVVTRWKV DLAGLLLQGV 300
  301 PILLLIATLW ADFLTLILIL PTYELVKLYY LKTVKTDIEK SWLGELDYKR VDSIYDLDES 360
  361 GEGVYLFPSR QKAQKNFSIL LPLVRATLIS CVSSKWQLVY MAYLTVDFIY YMHRKVIEEI 420
  421 SGGTNMVSRL VAALIELNWS MEEEESKGLK KFYLLSGRLR NLIIKHKVRN DTVAGWYGEE 480
  481 EVYGMPKIMT IIKASTLNKN RHCIICTVCE GRKWKGGTCP KCGRHGKPIT CGMSLADFEE 540
  541 RHYKRIFIRE GNYEGPFRQE HNGFVQYTAR GQLFLRNLPI LATKVKMLMV GNLGEEIGDL 600
  601 EHLGWILRGP AVCKKITEHE KCHINILDKL TAFFGIMPRG TTPRAPVRFP TSLLKVRRGL 660
  661 ETGWAYTHQG GISSVDHVTA GKDLLVCDSM GRTRVVCQSN NKLTDETEYG VKTDSGCPDG 720
  721 ARCYVLNPEA VNISGSKGAV VHLQKTGGEF TCVTASGTPA FFDLKNLKGW SGLPIFEASS 780
  781 GRVVGRVKVG KNEESKPTKI MSGIQTVSKN TADLTEMVKK ITSMNRGDFK QITLATGAGK 840
  841 TTELPKAVVE EIGRHKRVLV LIPLRAAAES VYQYMRLKHP SISFNLRIGD MKEGDMATGI 900
  901 TYASYGYFCQ MPQPKLRAAM VEYSYIFLDE YHCATPEQLA IIGKIHRFSE SIRVVAMTAT 960
  961 PAGAVTTTGQ KHPIEEFIAP EVMKGEDLGS QFLDIAGLKI PVDEMKGNML VFVPTRNMAV1020
 1021 EVAKKLKAKG YNSGYYYSGE DPANLRVVTS QSPYVIVATN AIESGVTLPD LDTVVDTGLK1080
 1081 CEKRVRVSSK IPFIVTGLKR MAVTVGEQAQ RRGRVGRVKP GGYYRSQETA TGSKDYHYDL1140
 1141 LQAQRYGIED GINVTKSFRE MNYDWSLYEE DSLLITQLEI LNNLLISEDL PAAVKNIMAK1200
 1201 TDHPEPIQLA YNSYEVQVPV LFPKIRNGEV TDTYENYSFL NARKLGEDVP VYIYATEDED1260
 1261 LAVDLLGLDW PDPGNQQVVE TGKALKQVAG LSSAENALLV ALFGYVGYQA LSKRHVPMIT1320
 1321 DIYTIEDQRL EDTTHLQYAP NAIKTDGAET ELKELASGDV EKIMGAISDY AAGGLEFVKS1380
 1381 QAERIKTAPL FKENAEAAKG YVKKLIDSII EQKDVIIRYG LWGTHTALYK SIAARLGHET1440
 1441 AFATLVLKRL ESTLHLVLRL RGGMQIFVKT LTGKTITLEV EPSDTIENVK AKIQDKEGIP1500
 1501 PDQQRLIFAG KQLEDGRTLS DYNIQKESTL HLVLRLRGGG PAVCKKITEH EKCHINILDK1560
 1561 LTAFFGIMPR GTTPRAPVRF PTSLLKVRRG LETGWAYTHQ GGISSVDHVT AGKDLLVCDS1620
 1621 MGRTRVVCQS NNKLTDETEY GVKTDSGCPD GARCYVLNPE AVNISGSKGA VVHLQKTGGE1680
 1681 FTCVTASGTP AFFDLKNLKG WSGLPIFEAS SGRVVGRVKV GKNEESKPTK IMSGIQTVSK1740
 1741 NTADLTEMVK KITSMNRGDF RQITLATGAG KTTELPKAVV EEIGRHKRVL VLIPLRAAAE1800
 1801 SVYQYMRLKH PSISFNLRIG DMKEGDMATG ITYASYGYFC QMPQPKLRAA MVEYSYIFLD1860
 1861 EYHCATPEQL AIIGKIHRFS ESIRVVAMTA TPAGAVTTTG QKHPIEEFIA PEVMKGEDLG1920
 1921 SQFLDIAGLK IPVDEMKGNM LVFVPTRNMA VEVAKKLKAK GYNSGYYYSG EDPANLRVVT1980
 1981 SQSPYVIVAT NAIESGVTLP DLDTVVDTGL KCEKRVRVSS KIPFIVTGLK RMAVTVGEQA2040
 2041 QRRGRVGRVK PGRYYRSQET ATGSKDYHYD LLQAQRYGIE DGINVTKSFR EMNYDWSLYE2100
 2101 EDSLLITQLE ILNNLLISED LPAAVKNIMA RTDHPEPIQL AYNSYEVQVP VLFPKIRNGE2160
 2161 VTDTYENYSF LNARKLGEDV PVYIYATEDE DLAVDLLGLD WPDPGNQQVV ETGKALKQVA2220
 2221 GLSSAENALL VALFGYVGYQ ALSKRHVPMI TDIYTIEDQR LEDTTHLQYA PNAIKTDGAE2280
 2281 TELKELASGD VEKIMGAISD YAAGGLEFVK SQAERIKTAP LFKENAEAAK GYVKKLIDSI2340
 2341 IEQKDVIIRY GLWGTHTALY KSIAARLGHE TAFATLVLKW LAFGGESVSD HVRQAAVDLV2400
 2401 VYYVMNKPSF PGDSETQQEG 

YRC Informatics Platform - Version 3.0
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