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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39725569
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.37
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AMAAAGFDLG GHLSEVLLLS LVVMSDFAPE TASAIYLILH FSIPQSHTEV PDCDKSQLNL  60
   61 TVGLTTADVI PGSVWNIGRY VCIRPDWWPY ETTTVLVVEE VSQVVKLVLR AIRDLTRIWN 120
  121 AATSTAFLVC LVKVVRGQVL QGILWLLLIS GVQGYPKCKP DYSYAIAKND KVGLLGAEGL 180
  181 TTFWQEYKPK MILQDALVEV RCKDGEFVHR KKCGKEARYL AMLHTGALPT SVEFKKLFDK 240
  241 QKQEDIIEME NNFEFGLCPC DAKPLVKGKF NTTLLNGPAF QMACPIGWTG SVSCVLANED 300
  301 TLETTVVLTY IRSRPFPHRQ GCITHKILGE DLHDCILGGN WTCVAGEQLQ YAGGPIEHCK 360
  361 WCGYKFFSSE GLPHYPIGKC KLENETGYRL VDSTSCSRDG VAIVPTGTLK CKIGDTVVQV 420
  421 IAMDTKLGPM PCKPYEITPS EGPVEKTACT FNYTKTLKNK YFEPRDNYFQ QYMLKGEYQY 480
  481 WFDLEITDHH KDYFAESILV IVVALLGGRY VLWLLVTYMI LSEQKAFGSQ YGAGEIVMMG 540
  541 NLLTHDNIEV VTYFLLLYLL LREESSKKWV ILLYHAIVAH PLKTITVILL MIGGAVKAEP 600
  601 GVQGSMEQLD LCFMIVVLIV IGLIIARRDP TVVPLITIVG SLRVTGLVFG PRVDVAMAVI 660
  661 TLTLLMFSYV TDYFRYKRWL QCILSLVAGV FLIRSLKHLG EIETPDLTIP NWRPLTLVLL 720
  721 YLISTTVVTM WKVDLAGLLL QGVPILLLIM TLWADFLTII LILPTYELVK LYYLKTIKTD 780
  781 VEKSWLGGLD YKRVDTIYDV DESGEGVYLF PSRQKAHKNI SVLLPLIRAT LISCVSSRWQ 840
  841 LVYMAYLTLD FMYYMHRKII DEISGGTNLV SRIVAALIEL NWSMEEEEGK GLKKFYLLSG 900
  901 RLRNLIIKHK VRNETVAAWY GEEEVYGMPK IMTIIKANTL NKNKHCIVCT VCEGRKWKGG 960
  961 TCPKCGRHGK PITCGMSLAD FEERHYKRVF IREGNFEGPF RQEHNGFVQY TARGQLFLRN1020
 1021 LPILATKVKM LMIGNLGEEI GDLEHLGWIL RGPAVCKKIT EHEKCHTSIL DKLTAFFGIM1080
 1081 PRGTTPRAPV RFPTALLKVR RGLETGWAYT HQGGISSVDH VTAGKDLLVC DSMGRTRVVC1140
 1141 QSNNKLTDET EYGVKTDSGC PDGARCYVLN PEAINISGAK GAVVHLQKTG GEFTCVTASG1200
 1201 TPAFFDLKNL KGWSGLPIFE ASSGRVVGRV KVGKNEESKP TKIMSGIQTV SKNTADLTEM1260
 1261 VKKITSMNRG DFKQITLATG AGKTTELPKA VIEEIGRHKR VLVLIPLRAA AESVYQYMRL1320
 1321 KHPSISFNLR IGDMKEGDMA TGITYASYGY FCQMPQPKLR AAMVEYSYIF LDEYHCATPE1380
 1381 QLAIIGKIHR FSESIRVVAM TATPAGSVTT TGQKHPIEEF IAPEVMKGED LGSQFLDIAG1440
 1441 LKIPVEEMKD NMLVFVPTRN MAVEVAKKLK AKGYNSGYYY SGEDPANLRV VTSQSPYVVV1500
 1501 ATNAIESGVT LPDLDTVVDT GLKCEKRVRV SSKIPFIVTG LKRMAVTIGE QAQRRGRVGR1560
 1561 VKPGRYYRSQ ETATGSKDYH YDLLQAQRYG IEDGINVTKS FREMNYDWSL YEEDSLLITQ1620
 1621 LEILNNLLIS EDLPAAVKNI MARTDHPEPI QLAYNSYEVQ VPVLFPKIRN GEVTDTYENY1680
 1681 SFLNARKLGE DVPVYIYATE DEDLAVDLLG LDWPDPGNQQ VVETGKALKQ VVGLSTAENA1740
 1741 LLIALFGYVG YQALSKRHVP MITDIYTIED QRLEDTTHLQ YAPNAIRTEG TETELKELAL1800
 1801 GDAEKIMGAI SDYASGGLEF IKSQAEKIKT APSFRNNVES AKGYVQKFIA DYAAGGLEFV1860
 1861 KSQAERIKTA PLFKENAEAA KGYVKKLIDS IIEQKDVIIR YGLWGTHTAL YKSIAAKLGH1920
 1921 ETAFATLVLK RLESTLHLVP RLRGGMQIFV KTLTGKTITL EVEPSDTIEN VKAKIQDKEG1980
 1981 IPPDQQRLIF AGKQLEDGRT LSDYNIQKES TLHLVLRLRG GGPAVCKKIT EHEKCHINIL2040
 2041 DKLTAFFGIM PRGTTPRAPV RFPTSLLKVR RGLETGWAYT HQGGISSVDH VTAGKDLLVC2100
 2101 DSMGRTRVVC QSNNKLTDET EYGVKTDSGC PDGARCYVLN PEAVNISGSK GAVVHLQKTG2160
 2161 GEFTCVTASG TPAFFDLKNL KGWSGLPIFE ASSGRVVGRV KVGKNEESKP TKIMSGIQTV2220
 2221 SKNTADLTEM VKKITSMNRG DFKQITLATG AGKTTELPKA VVEEIGRHKR VLVLIPLRAA2280
 2281 AESVYQYMRL KHPSISFNLR IGDMKEGDMA TGITYASYGY FCQMPQPKLR AAMVEYSYIF2340
 2341 LDEYHCATPE QLAIIGKIHR FSESIRVVAM TATPAGAVTT TGQKHPIEEF IAPEVMKGED2400
 2401 LGSQFLDIAG LKIPVDEMKG NMLVFVPTRN MAVEVAKKLK AKGYNSGYYY SGEDPANLRV2460
 2461 VTSQSPYVIV ATNAIESGVT LPDLDTVVDT GLKCEKRVRV SSKIPFIVTG LKRMAVTVGE2520
 2521 QAQRRGRVGR VKPGRYYRSQ ETATGSKDYH YDLLQAQRYG IEDGINVTKS FREMNYDWSL2580
 2581 YEEDSLLITQ LEILNNLLIS EDLPAAVKNI MARTDHPEPI QLAYNSYEVQ VPVLFPKIRN2640
 2641 GEVTDTYENY SFLNARKLGE DVPVYIYATE DEDLAVDLLG LDWPDPGNQQ VVETGKALKQ2700
 2701 VAGLSSAENA LLVALFGYVG YQALSKRHVP MITDIYTIED QRLEDTTHLQ YAPNAIKTDG2760
 2761 AETELKELAS GDVEKIMGAI SDYAAGGLEF VKSQAERIKT APLFKENAEA AKGYVKKLID2820
 2821 SIIEQKDVII RYGLWGTHTA LYKSIAARLG HETAFATLVL KWLAFGGESV SDHVRQAAVD2880
 2881 LVVYYVMNKP SFPGDSETQQ EGRRFVASLF ISALATYTYK TWNYHSLSKV VEPALAYLPY2940
 2941 ATSALKMFTP TRLESVVILS TAIYKTYLSI RKGKSDGLLG TGISAAMEIL SQNPVSVGIS3000
 3001 VMLGVGAIAA HNAIESSEQK 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle