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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GPNMB_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLCGVLVF LLLAAGLPLQ AAKRFRDVLG HEQYPDHMRE NNQLRGWSSD ENEWDEQLYP  60
   61 VWRRGEGRWK DSWEGGRVQA ALTSDSPALV GSNITFVVNL VFPRCQKEDA NGNIVYERNC 120
  121 RSDLELASDP YVYNWTTGAD DEDWEDSTSQ GQHLRFPDGK PFPRPHGRKK WNFVYVFHTL 180
  181 GQYFQKLGRC SARVSINTVN LTVGPQVMEV IVFRRHGRAY IPISKVKDVY VITDQIPIFV 240
  241 TMYQKNDRNS SDETFLRDLP IFFDVLIHDP SHFLNYSAIS YKWNFGDNTG LFVSNNHTLN 300
  301 HTYVLNGTFN FNLTVQTAVP GPCPSPTPSP SSSTSPSPAS SPSPTLSTPS PSLMPTGHKS 360
  361 MELSDISNEN CRINRYGYFR ATITIVDGIL EVNIIQVADV PIPTPQPDNS LMDFIVTCKG 420
  421 ATPTEACTII SDPTCQIAQN RVCSPVAVDE LCLLSVRRAF NGSGTYCVNF TLGDDASLAL 480
  481 TSALISIPGK DLGSPLRTVN GVLISIGCLA MFVTMVTILL YKKHKTYKPI GNCTRNVVKG 540
  541 KGLSVFLSHA KAPFSRGDRE KDPLLQDKPW ML

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle