YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48675349, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.93
Transmembrane Helix	65	88	0.87
Non-Cytoplasmic	89	99	0.83
Transmembrane Helix	100	119	0.81
Cytoplasmic	120	128	0.63
Transmembrane Helix	129	149	0.90
Non-Cytoplasmic	150	154	0.70
Transmembrane Helix	155	176	0.89
Cytoplasmic	177	183	0.75
Transmembrane Helix	184	206	0.80
Non-Cytoplasmic	207	222	0.67
Transmembrane Helix	223	246	0.84
Cytoplasmic	247	277	0.76
Transmembrane Helix	278	298	0.70
Non-Cytoplasmic	299	313	0.82
Transmembrane Helix	314	335	0.88
Cytoplasmic	336	351	0.91
Transmembrane Helix	352	372	0.93
Non-Cytoplasmic	373	377	0.85
Transmembrane Helix	378	400	0.93
Cytoplasmic	401	407	0.81
Transmembrane Helix	408	431	0.87
Non-Cytoplasmic	432	438	0.73
Transmembrane Helix	439	461	0.90
Cytoplasmic	462	530	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVEGEPGS SMHGVTGREQ TFAFSVASPI VPTDPTAKFD LPVDSEHKAK VFKIFSLANP  60
   61 HMRTFHLSWI SFFTCFVSTF AAAPLVPIIR DNLNLTKQDI GNAGVASVSG SIFSRLVMGA 120
  121 VCDLLGPRYG CAFLIMLSAP TVFCMSFVSD AGGYLAVRFM IGFSLATFVS CQYWMSTMFN 180
  181 SKIIGLVNGT AAGWGNMGGG ATQLLMPLVF DIIGRVGATP FTAWRIAFFI PGWLHVIMGI 240
  241 MVLTLGQDLP DGNLAALQKK GDVAKDQFSK VLWHAITNYR TWIFVLLYGY SMGVELSIDN 300
  301 VIAEYFYDRF NLKLHTAGII AAAFGMANIV ARPFGGFASD RAARYFGMRG RLWTLWILQT 360
  361 LGGVFCIWLG RANSLPIAVF AMILFSVGAQ AACGATFGVI PFISRRSLGI ISGLTGAGGN 420
  421 FGSGLTQLVF FSSAAFSTAT GLSLMGVMIV CCTLPVTLVH FPQWGSMFLP PSKDVVKSTE 480
  481 EFYYGAEWNE EEKQKGLHQQ SLRFAENSRS ERGRRVASAP TPPNTTPSHV