YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|123292826, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAAVSAPA GGGPNPGSGA EMVRGQAFDV GPRYSNLSYI GEGAYGMVCS AYDRDNKVRV  60
   61 AIKKISPFEH QTYCQRTLRE IKILLRFKHE NIIGINDIIR TPTIDQMKDV YIVQDLMETD 120
  121 LYKLLKTQHL SNDHICYFLY QILRGLKYIH SANVLHRDLK PSNLLLNTTC DLKICDFGLA 180
  181 RVADPDHDHT GFLTEYVATR WYRAPEIMLN SKGYTKSIDI WSVGCILAEM LSNRPIFPGK 240
  241 HYLDQLNHIL GILGSPSQED LNCIINIKAR NYLLSLPLRS KVPWNRLFPN ADPKALDLLD 300
  301 KMLTFNPHKR IEVEEALAHP YLEQYYDPTD EPVAEAPFKF DMELDDLPKE TLKELIFEET 360
  361 ARFQPGYRP

Type	Start	End	Confidence
Signal Peptide	1	19	0.66
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	369	0.99