YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28173296
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLWCVLVLL NLVSVATGTN AGVKVRLTQK GLEYGRQIGI ASIQQKLRTI KVPDISGTEK  60
   61 VDPIGKVQYS FTGMQIVNLG LPKSALVLVP DTGVMLSIGN AYINLHGNWR VKYLRIIKDS 120
  121 GSFDLAVSEL TISTTVAVMS DDTGHPTVSM TNCAATVGSV NVKFHGGASW LYNLFSSFIN 180
  181 KALRNALQKQ ICPLVADSIA DINPHLKTLN VLAKVDQYAE IEYSMVGSPV ISNTSIDLGL 240
  241 KGEFYNIGQH KEPPFSPTPF SLPSQDTDML YIGVSAFTIN SAGFVYNRAG ALSLYITDDM 300
  301 IPSGSPIRLN TKTFGAFIPQ IEKMYPGLMM KLLVETVKEP IVTFEPNNMT VQASSTVTAY 360
  361 AIQPNSTLSP LFVLNLEVSV STHIYVTELK LAGNVTLNKI NMSLAKSYVG PFQVTSLDNI 420
  421 FTIVLKFAVI PKVNARLQEG YPLPAIGKMQ LVNSQLKVLK DYLLIGTDVQ FTG

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	473	0.98