YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62898273, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.53
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVSVYAPP VGGFSFDNCR RNAVLEADFA KRGYKLPKAR KTGTTIAGVV YKDGIVLGAD  60
   61 TRATEGMVVA DKNCSKIHFI SPNIYCCGAG TAADTDMTTQ LISSNLELHS LSTGRLPRVV 120
  121 TANRMLKQML FRYQGYIGAA LVLGGVDVTG PHLYSIYPHG STDKLPYVTM GSGSLAAMAV 180
  181 FEDKFRPDME EEEAKNLVSE AIAAGIFNDL GSGSNIDLCV ISKNKLDFLR PYTVPNKKGT 240
  241 RLGRYRCEKG TTAVLTEKIT PLEIEVLEET VQTMDTS

Type	Start	End	Confidence
Cytoplasmic	1	132	0.51
Transmembrane Helix	133	150	0.49
Non-Cytoplasmic	151	277	0.70