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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|37359768
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASGFWIWAAV LLVPVAAVYE DQVGKFDWRQ QYVGKIKFAS LEFSPGSKKL VVATEKNVIA  60
   61 ALNSRTGEIL WRHVDKGTAE GAVDAMLVHG QDAITVSNGG RLMRSWETNI GGLNWEITLD 120
  121 TGSFQALGLV GLQESVRYIA VLKKTTLTLH HLSSGHLKWV EHLPESDSIL YQMVYSYGSG 180
  181 VVWALGIVPF SHVNIVKFNV EDGEIVQQVR VWTPWLQHLT GACGVVDEAV LVCPDPSSHS 240
  241 LHTLALETEW ELRQIPLQSP DLEFGSGFQP QVLPTQPSPV APSRAQFFLQ LSPSHYALLH 300
  301 YHHGAVTLLK NFPQATLVSF ATTGEKTVAA VMTCRTEVQK PVSAGDGSVA SFPETSGAQD 360
  361 SLACFNQTYT INLYLVETGR RLLDTSISFS LEQKGTRPEQ LYIQVFLKKD DSVGYRALVQ 420
  421 TQDHLQLFLQ QLAGKVVLWS REESLAEVVC LEMVDLPLTG AQAELEGEFG KKAAIQDGLL 480
  481 GMFLKRLSSQ LILLQAWTSH LWKMFYDARK PRSQIKNEIN IDTLARDEFN LQKMMVTVTA 540
  541 SGKLFGIESS SGTILWKQYL PNVKPDSSFK LMVQRTTAHF PHPPQCTLLV KDKETGMSSL 600
  601 FVFNPIFGKW SQVAPPVLKR PILQSLLLPV MDQDYAKVLL LVDDEYKVTA FPATRNVLRQ 660
  661 LHELAPSIFF YLVDAEQGRL SGYQLRKDLT TELSWELTIP PEVQRVVKVK GKRSSEHVHS 720
  721 QGRVMGDRSV LYKSLNPNLL AVVTESTDVH HERTFIGIFL IDGVTGRIIH SSVQKKARGP 780
  781 VHLVHSENWV VYQYWNSKAR RNELTALELY EGTEQYNATA FSSLDRPQLP QVLQQSYIFP 840
  841 SSISAMEATI TERGITSRHL LIGLPSGAIL SLPKALLDPR RPEIPTEQSR EENLIPYSPD 900
  901 VQVHAERFIN YNQTVSRMRG IYTAPSGLES TCLVVAYGLD IYQTRVYPSK QFDVLKDDYD 960
  961 YVLISSVLFG LVFATMITKR LAQVKLLNRA WR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle