YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22266724
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.79
Transmembrane Helix	12	31	0.82
Non-Cytoplasmic	32	66	0.95
Transmembrane Helix	67	87	0.93
Cytoplasmic	88	95	0.85
Transmembrane Helix	96	114	0.95
Non-Cytoplasmic	115	120	0.85
Transmembrane Helix	121	141	0.92
Cytoplasmic	142	147	0.77
Transmembrane Helix	148	167	0.90
Non-Cytoplasmic	168	174	0.79
Transmembrane Helix	175	199	0.89
Cytoplasmic	200	208	0.90
Transmembrane Helix	209	232	0.84
Non-Cytoplasmic	233	260	0.95
Transmembrane Helix	261	281	0.90
Cytoplasmic	282	287	0.77
Transmembrane Helix	288	306	0.86
Non-Cytoplasmic	307	311	0.81
Transmembrane Helix	312	332	0.82
Cytoplasmic	333	342	0.73
Transmembrane Helix	343	365	0.81
Non-Cytoplasmic	366	683	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKGSSGRR PLLLGLLVAV ATVHLVICPY TKVEESFNLQ ATHDLLYHWQ DLEQYDHLEF  60
   61 PGVVPRTFLG PVVIAVFSSP AVYVLSLLEM SKFYSQLIVR GVLGLGVIFG LWTLQKEVRR 120
  121 HFGAMVATMF CWVTAMQFHL MFYCTRTLPN VLALPVVLLA LAAWLRHEWA RFIWLSAFAI 180
  181 IVFRVELCLF LGLLLLLALG NRKVSVVRAL RHAVPAGILC LGLTVAVDSY FWRQLTWPEG 240
  241 KVLWYNTVLN KSSNWGTSPL LWYFYSTLPR GLGCSLLFIP LGLVDRRTHA PTVLALGFMA 300
  301 LYSLLPHKEL RFIIYAFPML NITAARGCSY LLNNYKKSWL YKAGSLLVIG HLVVNAAYSA 360
  361 TALYVSHFNY PGGVAMQRLH QLVPPQTDVL LHIDVAAAQT GVSRFLQVNS AWRYDKREDV 420
  421 QPGTGMLAYT HILMEAAPGL LALYRDTHRV LASVVGTTGV SLNLTQLAPL QRPPADKAGA 480
  481 SGEAPPAVLR GTRQPSAATG LPGAVITTSF WHNSSTIMTI QRSKSKDWAP ASDRHQTRSR 540
  541 ASSTASAGAL STKERGAQVL LAPREPLPRV MVASSGLPAG DCRPDQVPFM TNQEQRAHPG 600
  601 TCLPGGHVCP AHPGGAVFWQ HPTLAARGPL GAPKTAPPLR GDHGGPGRTP PPWCHHCNFC 660
  661 IHRHPISITD KILGDKHIQK GMR