YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28558782
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.70
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSLTAPHGL PLFLFLLLFL FSSVSAQFQP APDPRSDPYQ YRLSGSMAVI IVILIAALFF  60
   61 MAFFSVYIRH CNDSPSNTVR PITAAAGRSR RATRGLDPAV IETFPTLIYS DVKEHKIGKS 120
  121 ALECAVCLNE FEDDETLRLI PKCDHVFHPE CIDAWLASHS TCPVCRANLS PQPTDSVHRA 180
  181 DDSNAVVNSD TDGGDIEAQS NDVVSETTAP PTVQIQTESE LSTTTSNKAL NRTRTRGSRS 240
  241 NRLRWLFPRS HSTGHSLVQP GEDTERFTLR LPVEIRKQVV NRKLHRATSM VVLARQSSSM 300
  301 RGYRFGSGEG SSRGKYYRRL ERLDRTSKSD RWVLSMTPPF FTRMSSMKTP RGGSNRAEPG 360
  361 SGRELGQGNT AVDSSRLPV

Type	Start	End	Confidence
Signal Peptide	1	26	0.91
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	46	0.88
Transmembrane Helix	47	68	0.72
Cytoplasmic	69	379	0.72