YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14091469
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.84
Transmembrane Helix	20	40	0.66
Non-Cytoplasmic	41	57	0.78
Transmembrane Helix	58	80	0.74
Cytoplasmic	81	149	0.96
Transmembrane Helix	150	172	0.89
Non-Cytoplasmic	173	189	0.89
Transmembrane Helix	190	209	0.93
Cytoplasmic	210	217	0.73
Transmembrane Helix	218	241	0.88
Non-Cytoplasmic	242	264	0.92
Transmembrane Helix	265	285	0.91
Cytoplasmic	286	296	0.73
Transmembrane Helix	297	318	0.90
Non-Cytoplasmic	319	341	0.90
Transmembrane Helix	342	367	0.83
Cytoplasmic	368	391	0.88
Transmembrane Helix	392	412	0.89
Non-Cytoplasmic	413	420	0.80
Transmembrane Helix	421	443	0.91
Cytoplasmic	444	448	0.82
Transmembrane Helix	449	469	0.93
Non-Cytoplasmic	470	476	0.76
Transmembrane Helix	477	497	0.93
Cytoplasmic	498	530	0.89
Transmembrane Helix	531	550	0.55
Non-Cytoplasmic	551	772	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEANNNPI RRESWKTVLT LAYQSLGVVY GDLATSPLYV YKSAFAEDIQ HSESNEEIYG  60
   61 VLSFVFWTLT LIPLLKYVFI VLRADDNGEG GTFALYSLLC RHARVSSLPN CQLADEDLSA 120
  121 YKKDDFSSAD KDPRSSLKLT LEKHKVLHKV LLILALIGAC MVIGDGVLTP ALSVFSAVSG 180
  181 LELSTSKEHH GYIQVPVACV ILILLFALQH YGTHRVGFLF APIVITWLLC ISTIGVYNIV 240
  241 YWNPHVYRAL SPYYMYKFLK KTQRGGWMSL GGILLCMTGS EAMFADLGHF SQSSIKIAFS 300
  301 FVVYPALILA YMGQAAYLSM HHSLQSGYRV GFYVSVPEKI RWPVLAIAIL AAVVGSQAVI 360
  361 TGTFSIIKQC SALGCFPRVR IIHTSAKRQG QIYIPEINWT LMLLCLAVTI GFRDTKHMGN 420
  421 ASGLAVITVM LVTTCLMSLV MVLCWKKSVF LAIGFIFFFG SIEALYFSAS LIKFLEGAWV 480
  481 PVALSFIFMI VMYVWHYGTQ KKYEFDVQNK VPINWLLDLS PNLGIVRVRG IGLIQTELVA 540
  541 GIPAIFSHFV TNLPAFHQVL VFLCVKSVPV PHVKSEERFL VGRIGPREFR IYRCIARYGY 600
  601 RDNHKDEFEF EKDLVCSIAE FIRSEKPENK NAPENEDYDE ENLTVVGSFS TNKGVKLSED 660
  661 EMDSTEIVGT SELQKVNSLD KPKKRVRFVV PETPQIDNQM QEELQDLMEA RESGMVFILG 720
  721 QSYVRAKTGS SFIKKMAINY GYDFLRRNSR GPTYALSVPH ASTLEVGMVY HV