YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX39_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.95
Transmembrane Helix	62	84	0.80
Non-Cytoplasmic	85	101	0.76
Transmembrane Helix	102	125	0.77
Cytoplasmic	126	133	0.92
Transmembrane Helix	134	158	0.82
Non-Cytoplasmic	159	172	0.82
Transmembrane Helix	173	194	0.85
Cytoplasmic	195	202	0.83
Transmembrane Helix	203	226	0.88
Non-Cytoplasmic	227	234	0.80
Transmembrane Helix	235	257	0.93
Cytoplasmic	258	276	0.92
Transmembrane Helix	277	297	0.94
Non-Cytoplasmic	298	316	0.84
Transmembrane Helix	317	338	0.92
Cytoplasmic	339	354	0.90
Transmembrane Helix	355	378	0.90
Non-Cytoplasmic	379	402	0.88
Transmembrane Helix	403	424	0.83
Cytoplasmic	425	431	0.64
Transmembrane Helix	432	453	0.89
Non-Cytoplasmic	454	459	0.78
Transmembrane Helix	460	480	0.91
Cytoplasmic	481	507	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVSNETVER TDLRTPLVDP ADTEVKPLPE VGLESVLTES SLSYRRRVYL GACIELKVLF  60
   61 RLALPAILIY LVNSGMGISA RVFAGHVGSQ ELAAASIGNS CFNLVYGLML GMGSAVETLC 120
  121 GQAYGAHRYE MLGIYLQRAT IVLALVGLPM TLLYTFSYPI LILLGEPKTV SYMGSKYIAG 180
  181 LIPQIFAYAV NFTAQKFLQA QSVVAPSAFI SAAALILQIL LTWITVYVMD MGFMGIAYVL 240
  241 TISWWVIVGS QCFYIAVSPK FRHTWTGLSW RSLQGLWSFF KLSAGSAVMI CLEMWYSQIL 300
  301 VLLAGLLENP ARSLDSLSIC MSISALSFMV SVGFNAAVSV RTSNELGAGN PKSAWFSTWT 360
  361 ATFVSFVISV TEALAVIWFR DYVSYIFTED ADVAKAVSDL CPFLAITIIL NGIQPVLSGV 420
  421 AVGCGWQTYV AYVNVGCYYV VGIPVGCILG FTFDFQAKGI WTGMIGGTLM QTLILLYVTY 480
  481 RTDWDKEVEK ARKRLDLWDD KKEPLQN